Package: ProjecTILs
Type: Package
Title: Reference-based analysis of scRNA-seq data
Version: 3.7.0
Authors@R: c(
  person(given = 'Massimo', family = 'Andreatta',
    email = 'massimo.andreatta@unige.ch',
    role = c('aut','cre'),
    comment = c(ORCID = '0000-0002-8036-2647')),
  person(given = 'Paul', family = 'Gueguen',
    email = 'paul.gueguen@fgcz.ethz.ch',
    role = c('aut'), 
    comment = c(ORCID = '0000-0003-2930-6073')),
  person('Josep','Garnica',
    email = 'josep.garnicacaparros@unige.ch',
    role = c('aut'),
    comment = c(ORCID = '0000-0001-9493-1321')),   
  person(given = 'Santiago', family = 'Carmona',
    email = 'santiago.carmona@unige.ch',
    role = c('aut'),
    comment = c(ORCID = '0000-0002-2495-0671'))
  )
Description: This package implements methods to project single-cell
        RNA-seq data onto a reference atlas, enabling interpretation of
        unknown cell transcriptomic states in the the context of known,
        reference states.
Depends: R(>= 4.3.0)
Imports: Seurat(>= 5.0.0), SeuratObject(>= 5.0.0), uwot, umap, Matrix,
        BiocParallel, BiocNeighbors, patchwork, reshape2, ggplot2,
        grDevices, scales, pracma, STACAS, UCell, scGate, pheatmap,
        RColorBrewer, dplyr, tidyr, jsonlite, digest
Suggests: fastICA, EnhancedVolcano, plotly,
biocViews:
BugReports: https://github.com/carmonalab/ProjecTILs/issues
URL: https://github.com/carmonalab/ProjecTILs
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://carmonalab.r-universe.dev
Date/Publication: 2025-12-19 08:30:18 UTC
RemoteUrl: https://github.com/carmonalab/ProjecTILs
RemoteRef: HEAD
RemoteSha: 1159e1778820180fd0233bbfc0d7f296e35bd25f
NeedsCompilation: no
Packaged: 2026-06-13 10:41:21 UTC; root
Author: Massimo Andreatta [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8036-2647>),
  Paul Gueguen [aut] (ORCID: <https://orcid.org/0000-0003-2930-6073>),
  Josep Garnica [aut] (ORCID: <https://orcid.org/0000-0001-9493-1321>),
  Santiago Carmona [aut] (ORCID: <https://orcid.org/0000-0002-2495-0671>)
Maintainer: Massimo Andreatta <massimo.andreatta@unige.ch>