# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "STACAS" in publications use:'
type: software
license: GPL-3.0-only
title: 'STACAS: STACAS: Sub-Type Anchoring Correction for Alignment in Seurat'
version: 2.4.1
doi: 10.32614/CRAN.package.STACAS
abstract: This package implements methods for batch correction and integration of
  scRNA-seq datasets, based on the popular Seurat anchor-based integration framework.
  In particular, STACAS is optimized for the integration of heterogenous datasets
  with only limited overlap between cell sub-types (e.g. TIL sets of CD8 from tumor
  with CD8/CD4 T cells from lymphnode), for which the default Seurat alignment methods
  would tend to over-correct biological differences. The 2.0 version of our package
  allows to the users to incorporate explicit information about cell-types in order
  to assist the integration process.
authors:
- family-names: Andreatta
  given-names: Massimo
  email: massimo.andreatta@unil.ch
  orcid: https://orcid.org/0000-0002-8036-2647
- family-names: Berenstein
  given-names: Ariel
  email: arieljberenstein@gmail.com
  orcid: https://orcid.org/0000-0001-8540-5389
- family-names: Garnica
  given-names: Josep
  email: Josep.Garnicacaparros@unige.ch
  orcid: https://orcid.org/0000-0001-9493-1321
- family-names: Carmona
  given-names: Santiago
  email: santiago.carmona@unil.ch
  orcid: https://orcid.org/0000-0002-2495-0671
repository: https://carmonalab.r-universe.dev
commit: ea34e824e17df6316823db0a9b6322af0833e501
date-released: '2026-01-27'
contact:
- family-names: Andreatta
  given-names: Massimo
  email: massimo.andreatta@unil.ch
  orcid: https://orcid.org/0000-0002-8036-2647