{ "_id": "6a4b4fb6a6574ff277f99643", "Package": "STACAS", "Type": "Package", "Title": "STACAS: Sub-Type Anchoring Correction for Alignment in Seurat", "Version": "2.4.1", "Authors@R": "c(\nperson(given = 'Massimo', family = 'Andreatta', email = 'massimo.andreatta@unil.ch', role = c('aut','cre'), comment = c(ORCID = '0000-0002-8036-2647')),\nperson(given = 'Ariel', family = 'Berenstein', email = 'arieljberenstein@gmail.com', role = c('aut'), comment = c(ORCID = '0000-0001-8540-5389')),\nperson(given = 'Josep', family = 'Garnica', email = 'Josep.Garnicacaparros@unige.ch', role = c('aut'), comment = c(ORCID = '0000-0001-9493-1321')),\nperson(given = 'Santiago', family = 'Carmona', email = 'santiago.carmona@unil.ch', role = c('aut'), comment = c(ORCID = '0000-0002-2495-0671'))\n)", "Description": "This package implements methods for batch correction and\nintegration of scRNA-seq datasets, based on the popular Seurat\nanchor-based integration framework. In particular, STACAS is\noptimized for the integration of heterogenous datasets with\nonly limited overlap between cell sub-types (e.g. TIL sets of\nCD8 from tumor with CD8/CD4 T cells from lymphnode), for which\nthe default Seurat alignment methods would tend to over-correct\nbiological differences. The 2.0 version of our package allows\nto the users to incorporate explicit information about\ncell-types in order to assist the integration process.", "biocViews": "", "License": "GPL-3 + file LICENSE", "Encoding": "UTF-8", "LazyData": "false", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev", "Repository": "https://carmonalab.r-universe.dev", "Date/Publication": "2026-01-27 09:46:28 UTC", "RemoteUrl": "https://github.com/carmonalab/STACAS", "RemoteRef": "HEAD", "RemoteSha": "ea34e824e17df6316823db0a9b6322af0833e501", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-06 06:41:59 UTC", "User": "root" }, "Author": "Massimo Andreatta [aut, cre] (ORCID:\n),\nAriel Berenstein [aut] (ORCID: ),\nJosep Garnica [aut] (ORCID: ),\nSantiago Carmona [aut] (ORCID: )", "Maintainer": "Massimo Andreatta ", "_user": "carmonalab", "_type": "src", "_file": 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