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message: 'To cite package "scTypeEval" in publications use:'
type: software
license: GPL-3.0-only
title: 'scTypeEval: Evaluation of cell type classifications in single-cell transcriptomics'
version: 1.1.0
doi: 10.32614/CRAN.package.scTypeEval
abstract: scTypeEval provides tools to evaluate and validate cell type classifications
  in single-cell transcriptomics when ground truth labels are limited or unavailable.
  Results are organized in an S4 object that integrates processed data, dimensional
  reductions, dissimilarity assays, and consistency metrics computed across samples.
  The workflow includes preprocessing and feature selection, principal component analysis,
  computation of dissimilarity matrices, internal validation metrics (for example,
  silhouette-based summaries), and visualization utilities to inspect heatmaps and
  PCA plots. Functions support common single-cell containers and enable comparison
  of clustering and labeling strategies across datasets.
authors:
- family-names: Garnica
  given-names: Josep
  email: josep.garnicacaparros@unige.ch
  orcid: https://orcid.org/0000-0001-9493-1321
- family-names: Andreatta
  given-names: Massimo
  email: massimo.andreatta@unige.ch
  orcid: https://orcid.org/0000-0002-8036-2647
- family-names: Carmona
  given-names: Santiago
  email: santiago.carmona@unige.ch
  orcid: https://orcid.org/0000-0002-2495-0671
repository: https://carmonalab.r-universe.dev
repository-code: https://github.com/carmonalab/scTypeEval
commit: 33e37ac9513de2bd02ebdd1ff20449f1c7d2ae36
url: https://github.com/carmonalab/scTypeEval
date-released: '2026-05-15'
contact:
- family-names: Garnica
  given-names: Josep
  email: josep.garnicacaparros@unige.ch
  orcid: https://orcid.org/0000-0001-9493-1321